Main Subjects = Bioinformatics
Genomic and proteomic bioinformatics analysis of two heat shock proteins (HSP90-a and HSP90-b) of Tali goat breed and their comparison in seven species of domestic animals

Articles in Press, Accepted Manuscript, Available Online from 30 November 2022

elham rezvannejad


Identification of key genes as potential biomarkers involved in triple-negative breast cancer using RNA sequencing transcriptomic data analysis of breast cancer patients compared to healthy individuals

Articles in Press, Accepted Manuscript, Available Online from 20 December 2022

Pegah Mahboobnia; Mostafa Rafiepour; Reza Mahdian; farinaz behfarjam


Investigation of 36-32 disulfide bond in structural changes and flexibility of FK domain of FSTL1 protein: An in silico study

Articles in Press, Accepted Manuscript, Available Online from 14 January 2023

s.shahrbanoo jafari; Rahman Emamzadeh; Mahboobeh Nazari; Sepideh Jafari; Mohamad Reza Ganjalikhany


The RGD sequence improves the binding of collagen IV-derived peptides to integrins: an in silico study

Articles in Press, Accepted Manuscript, Available Online from 11 April 2023

Reyhane Chamani; Mohsen Namnabat; Mohammad hossein Taleqani; Aylar Imanpour


NSP1 inhibition effects on Human 40s ribosomes in comparison to intermediate carrier animals

Articles in Press, Accepted Manuscript, Available Online from 11 April 2023

Bijan Bambai; Afagh Bapirzadeh; mitra salehi; zarrin minuchehr


Study of monkeypox virus thymidine kinase interaction with natural compounds using molecular docking

Articles in Press, Accepted Manuscript, Available Online from 15 May 2023

Tooba Abdizadeh


Biomechanical Investigation of Bacterial Biofilm Membrane and Assessment of the Anti-Biofilm Peptide Effects on Molecular and Biomechanical Characteristics of the Membrane: A Molecular Dynamics Investigation

Articles in Press, Accepted Manuscript, Available Online from 05 November 2023

Fatemeh Ebrahimi Tarki; Mahboobeh Zarrabi; Mahkame Sharbatdar; Ahya Abdi Ali


Introducing membrane models for cancer cell and evaluating their functional role in response to bioactive peptides, using All-atom and Steered molecular dynamic simulations

Articles in Press, Accepted Manuscript, Available Online from 27 November 2023

Somayyeh Dabbagh Sadeghpoor; mahboobeh zarrabi; Saeed Balalaie; Reihaneh Ramezani


In silico extraction and screening of apoptosis-activating peptides from milk with the aim of optimizing cancer treatment

Articles in Press, Accepted Manuscript, Available Online from 14 December 2023

Elnaz Chitsazzadeh; Farzaneh Mohamadi Farsani; Mohamad Reza Ganjalikhany


RNA-Protein interaction prediction using transformers and asymmetric Siamese neural network

Volume 37, Issue 1, March 2024, Pages 74-91

10.22034/cmr.2022.2200

Nikta Gohari Sadr; Armin Behjati; Fatemeh Zare-Mirakabad


Study of structural and dynamic changes of GSK3β protein in the presence of CHIR99021 ligand using molecular simulation and docking

Volume 36, Issue 3, September 2023, Pages 212-229

Javad Kazemi; Hosein Shahsavarani; Parviz Pakzad; Mohammadali Shokrgozar


Identification and expression analysis of salt stress-related miRNAs in Lentil (Lens culinaris L.)

Volume 36, Issue 3, September 2023, Pages 230-247

Mehdi Goudarzi; Ahmad Ismaili; Seyed Sajad Sohrabi; Farhad Nazarian-Firouzabadi; Hamid Reza Eisvand


In silico comparison of bioactive peptides derived from three microalgae RuBisCO enzyme with commonly consumed proteins

Volume 36, Issue 1, March 2023, Pages 63-77

Leila Zarandi-Miandoab; seyedeh fahimeh razavi; Farshad Pouryousef; Nader Chaparzadeh


Acetyl-11-keto-β-boswellic acid derivatives effects on the monomer and dimer structure of Aβ(1-40) and Aβ(1-42) peptides: molecular dynamics simulation approach

Volume 35, Issue 4, December 2022, Pages 669-684

shahla Bolbolian; Mohammad Reza Bozorgmehr; Ali Morsali


Hemophilia A disease: Identification and prediction of new microRNA

Volume 35, Issue 3, October 2022, Pages 425-437

Halimeh Rezaei; Majid Motovali-Bashi; Seyed Javad Mowla


Hightroughput structure-based virtual screening to select new inhibitory chemical compound(s) against FOXM1 transcription factor with its DNA target

Volume 35, Issue 2, June 2022, Pages 198-211

hamid mahdiuni; tahereh merati


In silico design and molecular modeling of peptidic stabilizers of G-quadruplex

Volume 35, Issue 2, June 2022, Pages 316-331

Seyed Ahmad Ebadi; Maryam Khazaei; Dara Dastan


Effects of Meta-Heuristic Algorithms in Protein-Protein Interaction Networks Alignment in Five Biological Species

Volume 35, Issue 1, May 2022, Pages 152-167

Elham Mahdipour; Mohammad Ghasemzadeh


Immunoinformatics study of encoded lysines in bacteriophages effective on Pseudomonas genus bacteria

Volume 34, Issue 3, November 2021, Pages 358-371

ashkan abbasifardsemnani; mehdi sadeghi; Shamsozoha Abolmaali; shakiba Darvish Alipour


In silico Analysis of Molecular Evolution and Expansion in Geranylgeranyl diphosphate synthase Protein Family in Plants

Volume 33, Issue 3, October 2020, Pages 326-342

Sara Farahbakhsh; sonbol nazeri; Zarrin Minuchehr


The Comparison of Assembly Softwares and Gene Ontology Analysis using transcriptome sequencing data from Dracocephalum kotschyi Boiss.

Volume 33, Issue 2, June 2020, Pages 155-168

Abolnaser Poursalavati; amin ebrahimi; Sajad Rashidi Monfared


Transcription Factor Binding Sites Prediction Based on Histone Acetylations using Neural Networks

Volume 32, Issue 4, December 2019, Pages 411-416

Nafiseh Banirazi Motlagh; Fatemeh Zare-Mirakabad


Modeling of heat stress protein 70 (HSP70) of honey bee by homology modeling and molecular simulation method and interaction to HSP40

Volume 32, Issue 4, December 2019, Pages 417-431

elham rezvannejad; safa lotfi; azadeh boustan


Isolation, cloning and bioinformatic analysis of cytochrom oxidase C subunit I in Citrus

Volume 32, Issue 4, December 2019, Pages 469-477

Ali Abasi; Masoud Tohidfar; nader hasanzadeh


Study of amino acid composition, structure and evolutionary relationships of Disintegrin toxins from Vipera species

Volume 32, Issue 3, September 2019, Pages 320-329

Maryam Rabiee; Farzaneh Mohamadi Farsani